STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMERY_1848GtrA-like protein. (189 aa)    
Predicted Functional Partners:
BMERY_1847
Hypothetical protein.
       0.714
BMERY_1072
PMT family glycosyltransferase.
 
   
 0.576
BMERY_0255
Hypothetical protein.
  
     0.557
BMERY_1231
ABC transporter permease.
  
     0.537
BMERY_1507
Sugar ABC transporter periplasmic protein.
 
     0.529
BMERY_0064
DivIVA protein.
  
     0.488
BMERY_0747
Multiple sugar-binding periplasmic protein.
  
     0.457
BMERY_0553
Family 2 glycosyl transferase.
 
 
  0.455
BMERY_1529
N-acetylglucosaminyltransferase.
 
 
  0.440
BMERY_1717
Endonuclease/exonuclease/phosphatase.
  
     0.431
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.