Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMERY_1920Xylanase Y. (379 aa)    
Predicted Functional Partners:
BMERY_1921
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.969
BMERY_1922
Esterase; Belongs to the type-B carboxylesterase/lipase family.
 
     0.886
BMERY_1919
Putative outer membrane protein.
     
 0.839
BMERY_1546
alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.784
BMERY_1553
Beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.734
BMERY_1264
Xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.684
BMERY_1582
Cellobiose-phosphorylase.
  
   
 0.609
BMERY_1561
Acetylesterase.
 
   
 0.563
BMERY_1139
Beta-hexosaminidase.
     
 0.561
BMERY_1251
Putative beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
     
 0.561
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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