BMERY_1925 protein (Bifidobacterium merycicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

BMERY_1925

BioY protein. (198 aa)

Predicted Functional Partners:

BMERY_1071

0.985

BMERY_0926

0.958

BMERY_1092

0.952

BMERY_1926

0.917

BMERY_1066

0.885

BMERY_1067

0.868

BMERY_1927

0.771

BMERY_1724

0.571

BMERY_1928

0.448

BMERY_0927

0.443

Your Current Organism:

Bifidobacterium merycicum

NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BMERY_0926	BMERY_0927	Cobalt transport protein.	Cobalt ABC transporter ATPase.	0.977
BMERY_0926	BMERY_1066	Cobalt transport protein.	Fused ATP-binding protein and permease of ABC transporter.	0.757
BMERY_0926	BMERY_1067	Cobalt transport protein.	Cobalt import ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein.	0.829
BMERY_0926	BMERY_1071	Cobalt transport protein.	ATP binding protein of ABC transporter.	0.898
BMERY_0926	BMERY_1092	Cobalt transport protein.	Cobalt ABC transporter permease.	0.878
BMERY_0926	BMERY_1925	Cobalt transport protein.	BioY protein.	0.958
BMERY_0927	BMERY_0926	Cobalt ABC transporter ATPase.	Cobalt transport protein.	0.977
BMERY_0927	BMERY_1066	Cobalt ABC transporter ATPase.	Fused ATP-binding protein and permease of ABC transporter.	0.861
BMERY_0927	BMERY_1067	Cobalt ABC transporter ATPase.	Cobalt import ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein.	0.871
BMERY_0927	BMERY_1071	Cobalt ABC transporter ATPase.	ATP binding protein of ABC transporter.	0.760
BMERY_0927	BMERY_1092	Cobalt ABC transporter ATPase.	Cobalt ABC transporter permease.	0.858
BMERY_0927	BMERY_1925	Cobalt ABC transporter ATPase.	BioY protein.	0.443
BMERY_1066	BMERY_0926	Fused ATP-binding protein and permease of ABC transporter.	Cobalt transport protein.	0.757
BMERY_1066	BMERY_0927	Fused ATP-binding protein and permease of ABC transporter.	Cobalt ABC transporter ATPase.	0.861
BMERY_1066	BMERY_1067	Fused ATP-binding protein and permease of ABC transporter.	Cobalt import ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein.	0.995
BMERY_1066	BMERY_1071	Fused ATP-binding protein and permease of ABC transporter.	ATP binding protein of ABC transporter.	0.990
BMERY_1066	BMERY_1092	Fused ATP-binding protein and permease of ABC transporter.	Cobalt ABC transporter permease.	0.702
BMERY_1066	BMERY_1925	Fused ATP-binding protein and permease of ABC transporter.	BioY protein.	0.885
BMERY_1067	BMERY_0926	Cobalt import ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein.	Cobalt transport protein.	0.829
BMERY_1067	BMERY_0927	Cobalt import ABC superfamily ATP binding cassette transporter, ATP-binding/permease protein.	Cobalt ABC transporter ATPase.	0.871