STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMERY_1950Hypothetical protein. (837 aa)    
Predicted Functional Partners:
BMERY_1941
TraG family protein.
 
  
 0.829
BMERY_0980
TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.813
BMERY_0974
Relaxase/mobilization nuclease.
 
   
 0.771
BMERY_1954
Cell wall-associated hydrolase, invasion-associated protein.
 
  
 0.724
BMERY_0978
Collagen-binding protein.
 
    0.720
BMERY_0960
Transcriptional regulator.
  
     0.692
BMERY_0962
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
   
 0.633
BMERY_1646
Putative site-specific recombinase.
 
     0.626
BMERY_1560
TetW.
  
     0.622
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.615
Your Current Organism:
Bifidobacterium merycicum
NCBI taxonomy Id: 78345
Other names: AS 1.2273, ATCC 49391, B. merycicum, CCUG 34976, DSM 6492, JCM 8219, LMG 11341, LMG:11341, strain Ru915B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.