Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BRUM_0189 | BRUM_0190 | BRUM_0189 | BRUM_0190 | Type I phosphodiesterase/nucleotide pyrophosphatase. | DNA topoisomerase IV subunit A. | 0.741 |
BRUM_0189 | BRUM_1806 | BRUM_0189 | BRUM_1806 | Type I phosphodiesterase/nucleotide pyrophosphatase. | Putative integral membrane protein. | 0.541 |
BRUM_0189 | dnaK | BRUM_0189 | BRUM_1625 | Type I phosphodiesterase/nucleotide pyrophosphatase. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.447 |
BRUM_0190 | BRUM_0189 | BRUM_0190 | BRUM_0189 | DNA topoisomerase IV subunit A. | Type I phosphodiesterase/nucleotide pyrophosphatase. | 0.741 |
BRUM_0190 | BRUM_0196 | BRUM_0190 | BRUM_0196 | DNA topoisomerase IV subunit A. | DNA gyrase subunit B. | 0.993 |
BRUM_0190 | BRUM_1806 | BRUM_0190 | BRUM_1806 | DNA topoisomerase IV subunit A. | Putative integral membrane protein. | 0.544 |
BRUM_0190 | dnaK | BRUM_0190 | BRUM_1625 | DNA topoisomerase IV subunit A. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.634 |
BRUM_0190 | ftsZ | BRUM_0190 | BRUM_0335 | DNA topoisomerase IV subunit A. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.603 |
BRUM_0190 | gyrB | BRUM_0190 | BRUM_1804 | DNA topoisomerase IV subunit A. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.997 |
BRUM_0190 | rpoA | BRUM_0190 | BRUM_0740 | DNA topoisomerase IV subunit A. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.561 |
BRUM_0190 | rpsS | BRUM_0190 | BRUM_0718 | DNA topoisomerase IV subunit A. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.534 |
BRUM_0190 | rsmG | BRUM_0190 | BRUM_1795 | DNA topoisomerase IV subunit A. | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.535 |
BRUM_0190 | tuf | BRUM_0190 | BRUM_1245 | DNA topoisomerase IV subunit A. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.559 |
BRUM_0196 | BRUM_0190 | BRUM_0196 | BRUM_0190 | DNA gyrase subunit B. | DNA topoisomerase IV subunit A. | 0.993 |
BRUM_0196 | dnaK | BRUM_0196 | BRUM_1625 | DNA gyrase subunit B. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.705 |
BRUM_0196 | ftsZ | BRUM_0196 | BRUM_0335 | DNA gyrase subunit B. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.407 |
BRUM_1806 | BRUM_0189 | BRUM_1806 | BRUM_0189 | Putative integral membrane protein. | Type I phosphodiesterase/nucleotide pyrophosphatase. | 0.541 |
BRUM_1806 | BRUM_0190 | BRUM_1806 | BRUM_0190 | Putative integral membrane protein. | DNA topoisomerase IV subunit A. | 0.544 |
BRUM_1806 | gyrB | BRUM_1806 | BRUM_1804 | Putative integral membrane protein. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.662 |
dnaK | BRUM_0189 | BRUM_1625 | BRUM_0189 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Type I phosphodiesterase/nucleotide pyrophosphatase. | 0.447 |
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