STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRUM_0215Hypothetical protein. (77 aa)    
Predicted Functional Partners:
BRUM_0686
Hypothetical protein.
  
     0.712
BRUM_0216
Helix-turn-helix domain-containing protein.
       0.698
BRUM_0213
RecX-like protein; Modulates RecA activity; Belongs to the RecX family.
 
     0.672
BRUM_1835
Aminoglycoside phosphotransferase.
  
     0.667
BRUM_0523
Hypothetical protein.
  
     0.660
BRUM_0866
Hypothetical protein.
  
     0.631
BRUM_0217
Competence/damage-inducible protein CinA domain protein; Belongs to the CinA family.
       0.628
BRUM_0218
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.628
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.624
crgA
Putative septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.619
Your Current Organism:
Bifidobacterium ruminantium
NCBI taxonomy Id: 78346
Other names: AS 1.2241, ATCC 49390, B. ruminantium, Bifidobacterium ruminatorum, CCUG 34975, DSM 6489, JCM 8222, LMG 12588, LMG:12588, strain Ru687
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