STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRUM_0380Hypothetical protein. (130 aa)    
Predicted Functional Partners:
BRUM_0381
Hypothetical protein.
       0.723
BRUM_0382
Hypothetical protein.
       0.723
BRUM_0383
Hypothetical protein.
       0.723
BRUM_0379
Hypothetical protein.
       0.714
BRUM_0384
Hypothetical protein.
       0.535
BRUM_0377
Glycosyl hydrolase family 25.
       0.447
BRUM_0385
Putative fibronectin, type III domain protein.
       0.400
Your Current Organism:
Bifidobacterium ruminantium
NCBI taxonomy Id: 78346
Other names: AS 1.2241, ATCC 49390, B. ruminantium, Bifidobacterium ruminatorum, CCUG 34975, DSM 6489, JCM 8222, LMG 12588, LMG:12588, strain Ru687
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.