STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRUM_0544Penicillin-binding protein. (761 aa)    
Predicted Functional Partners:
BRUM_0296
Peptidoglycan synthetase, penicillin-binding protein.
 
 
 0.944
BRUM_1737
Penicillin binding protein transpeptidase domain protein.
 
 
 0.937
BRUM_0798
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
  
  
 0.863
BRUM_0291
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 0.804
BRUM_0022
Penicillin-binding protein.
  
  
0.797
BRUM_0918
ErfK/YbiS/YcfS/YnhG family protein.
  
  
 0.765
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 
 0.753
BRUM_1738
Cell cycle protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family.
  
 
 0.714
BRUM_0545
Myo-inositol-1-phosphate synthase.
       0.660
BRUM_0770
Two-component system sensor kinase.
  
    0.657
Your Current Organism:
Bifidobacterium ruminantium
NCBI taxonomy Id: 78346
Other names: AS 1.2241, ATCC 49390, B. ruminantium, Bifidobacterium ruminatorum, CCUG 34975, DSM 6489, JCM 8222, LMG 12588, LMG:12588, strain Ru687
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