STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRUM_1134Putative PAC2 family protein. (275 aa)    
Predicted Functional Partners:
BRUM_0521
Glycerophosphoryl diester phosphodiesterase.
  
 0.765
BRUM_1251
Glycosyltransferase, group 1 family protein.
 
 
 0.764
BRUM_1181
Succinate dehydrogenase, iron-sulfur subunit.
  
 0.693
BRUM_1031
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.690
BRUM_1472
MIP glycerol uptake facilitator protein GlpF; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.690
BRUM_1180
Succinate dehydrogenase, flavoprotein subunit.
   
 
 0.660
gpsA
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 0.640
BRUM_1711
NAD/NADP octopine/nopaline dehydrogenase.
   
 0.640
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.633
whiB
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.620
Your Current Organism:
Bifidobacterium ruminantium
NCBI taxonomy Id: 78346
Other names: AS 1.2241, ATCC 49390, B. ruminantium, Bifidobacterium ruminatorum, CCUG 34975, DSM 6489, JCM 8222, LMG 12588, LMG:12588, strain Ru687
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