Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BRUM_0008 | BRUM_0792 | BRUM_0008 | BRUM_0792 | Hypothetical protein. | UDP-glucose 4-epimerase. | 0.684 |
BRUM_0008 | BRUM_1450 | BRUM_0008 | BRUM_1450 | Hypothetical protein. | Amine oxidase. | 0.596 |
BRUM_0792 | BRUM_0008 | BRUM_0792 | BRUM_0008 | UDP-glucose 4-epimerase. | Hypothetical protein. | 0.684 |
BRUM_0792 | BRUM_1450 | BRUM_0792 | BRUM_1450 | UDP-glucose 4-epimerase. | Amine oxidase. | 0.620 |
BRUM_0869 | BRUM_1450 | BRUM_0869 | BRUM_1450 | Phosphoribosyl transferase domain protein. | Amine oxidase. | 0.650 |
BRUM_0960 | BRUM_1450 | BRUM_0960 | BRUM_1450 | Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Amine oxidase. | 0.672 |
BRUM_1450 | BRUM_0008 | BRUM_1450 | BRUM_0008 | Amine oxidase. | Hypothetical protein. | 0.596 |
BRUM_1450 | BRUM_0792 | BRUM_1450 | BRUM_0792 | Amine oxidase. | UDP-glucose 4-epimerase. | 0.620 |
BRUM_1450 | BRUM_0869 | BRUM_1450 | BRUM_0869 | Amine oxidase. | Phosphoribosyl transferase domain protein. | 0.650 |
BRUM_1450 | BRUM_0960 | BRUM_1450 | BRUM_0960 | Amine oxidase. | Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.672 |
BRUM_1450 | BRUM_1451 | BRUM_1450 | BRUM_1451 | Amine oxidase. | Hypothetical protein. | 0.645 |
BRUM_1450 | BRUM_1452 | BRUM_1450 | BRUM_1452 | Amine oxidase. | Acetyltransferase, GNAT family. | 0.663 |
BRUM_1450 | argD | BRUM_1450 | BRUM_1050 | Amine oxidase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.463 |
BRUM_1450 | gatA | BRUM_1450 | BRUM_1454 | Amine oxidase. | aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.474 |
BRUM_1450 | gatB | BRUM_1450 | BRUM_1453 | Amine oxidase. | aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.515 |
BRUM_1450 | rho | BRUM_1450 | BRUM_1449 | Amine oxidase. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.492 |
BRUM_1451 | BRUM_1450 | BRUM_1451 | BRUM_1450 | Hypothetical protein. | Amine oxidase. | 0.645 |
BRUM_1451 | BRUM_1452 | BRUM_1451 | BRUM_1452 | Hypothetical protein. | Acetyltransferase, GNAT family. | 0.841 |
BRUM_1451 | gatA | BRUM_1451 | BRUM_1454 | Hypothetical protein. | aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.601 |
BRUM_1451 | gatB | BRUM_1451 | BRUM_1453 | Hypothetical protein. | aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.622 |
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