STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AK830_g11332Rab-GAP TBC domain-containing protein. (916 aa)    
Predicted Functional Partners:
AK830_g6245
Uncharacterized protein.
    
 0.789
AK830_g7421
GTP-binding protein ypt1.
    
 0.748
AK830_g4519
Regulator of cytoskeleton and endocytosis.
    
 
 0.730
AK830_g5875
Uncharacterized protein.
    
 0.717
AK830_g6763
Uncharacterized protein.
    
 0.717
AK830_g5037
VPS9 domain-containing protein.
   
  0.616
AK830_g2663
Uncharacterized protein.
   
  0.616
AK830_g8724
Protein hob3.
    
 
 0.613
AK830_g8437
Uncharacterized protein.
   
 
  0.550
AK830_g12491
Rab-GAP TBC domain-containing protein.
      
 0.513
Your Current Organism:
Neonectria ditissima
NCBI taxonomy Id: 78410
Other names: Cylindrocarpon willkommii, N. ditissima, Nectria ditissima
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