STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AK830_g11863Usp domain-containing protein. (571 aa)    
Predicted Functional Partners:
AK830_g5653
Superkiller protein 3.
    
 0.859
AK830_g9892
Putative ATP-dependent RNA helicase.
    
 0.854
AK830_g2218
CDC73_C domain-containing protein.
    
 0.829
AK830_g12449
Uncharacterized protein.
    
 0.796
AK830_g12043
Tetratricopeptide repeat protein 1.
    
 0.792
AK830_g9924
Tr-type G domain-containing protein.
    
 0.748
AK830_g6541
DNA damage-binding protein 1b.
    
 0.734
AK830_g739
Uncharacterized protein.
   
 0.716
AK830_g10481
RING-type domain-containing protein.
    
 0.707
AK830_g5024
Uncharacterized protein.
    
 0.699
Your Current Organism:
Neonectria ditissima
NCBI taxonomy Id: 78410
Other names: Cylindrocarpon willkommii, N. ditissima, Nectria ditissima
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.