STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AK830_g247Putative exopolygalacturonase B; Belongs to the glycosyl hydrolase 28 family. (499 aa)    
Predicted Functional Partners:
AK830_g6411
Putative alpha-L-arabinofuranosidase B.
     
 0.822
AK830_g2427
Putative endopolygalacturonase D.
  
 
0.818
AK830_g8960
Endopolygalacturonase 1.
     
0.796
AK830_g714
Putative exopolygalacturonase X.
  
  
 
0.796
AK830_g8340
Putative alpha-L-arabinofuranosidase C.
     
 0.792
AK830_g6675
Alpha-L-arabinofuranosidase A.
     
 0.792
AK830_g6138
Putative exopolygalacturonase B; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.788
AK830_g5124
Uncharacterized protein.
    
 0.741
AK830_g887
Uncharacterized protein.
    
 0.741
AK830_g12494
Ubiquitin-like domain-containing protein.
    
  0.673
Your Current Organism:
Neonectria ditissima
NCBI taxonomy Id: 78410
Other names: Cylindrocarpon willkommii, N. ditissima, Nectria ditissima
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.