STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AK830_g9421RING-type domain-containing protein. (595 aa)    
Predicted Functional Partners:
AK830_g12494
Ubiquitin-like domain-containing protein.
    
 0.844
AK830_g3553
Kexin; Belongs to the peptidase S8 family.
    
  0.764
AK830_g11513
Putative ubiquitin fusion degradation protein C12B10.01c.
     
 0.724
AK830_g3996
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
  0.682
AK830_g12235
Polyubiquitin.
    
 0.679
AK830_g9342
Ubiquitin-like domain-containing protein.
    
 0.679
AK830_g4818
Ubiquitin-like domain-containing protein.
    
 0.679
AK830_g11137
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.662
AK830_g12612
Ubiquitin-like domain-containing protein.
    
 0.638
AK830_g4021
CIA30 domain-containing protein.
    
 0.638
Your Current Organism:
Neonectria ditissima
NCBI taxonomy Id: 78410
Other names: Cylindrocarpon willkommii, N. ditissima, Nectria ditissima
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