STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AK830_g7466ANK_REP_REGION domain-containing protein. (640 aa)    
Predicted Functional Partners:
AK830_g9743
Cell division control protein 48; Belongs to the AAA ATPase family.
   
 
 0.873
AK830_g3302
ATPase_AAA_core domain-containing protein.
   
 
 0.873
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.866
AK830_g2204
Uncharacterized protein.
   
 
 0.865
AK830_g7377
Ribosome quality control complex subunit 2.
   
 
 0.683
AK830_g10249
Ubiquitin conjugation factor E4.
    
 
 0.664
AK830_g5674
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.652
AK830_g1832
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.643
AK830_g9327
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
    
   0.639
AK830_g10485
Ribosomal_L23eN domain-containing protein.
    
   0.639
Your Current Organism:
Neonectria ditissima
NCBI taxonomy Id: 78410
Other names: Cylindrocarpon willkommii, N. ditissima, Nectria ditissima
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