Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tpd52l2Uncharacterized protein. (205 aa)    
Predicted Functional Partners:
tpd52
Uncharacterized protein.
   
   0.963
tpd52l1
Uncharacterized protein.
    
   0.923
gabpa
GA-binding protein transcription factor, alpha subunit 60kDa.
    
   0.917
gabpb1
ANK_REP_REGION domain-containing protein.
    
  0.906
LOC103190494
Uncharacterized protein.
      
 0.796
pyroxd2
Amino_oxidase domain-containing protein.
      
 0.692
mal2
MARVEL domain-containing protein.
    
 
 0.686
yif1b
Protein YIF1B-B.
   
  
 0.684
ep400
Uncharacterized protein.
      
 0.662
tmem60
Transmembrane protein 60-like protein.
      
 0.624
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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