fdft1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

fdft1

Uncharacterized protein. (483 aa)

Predicted Functional Partners:

sqle

0.998

sc5d

0.983

LOC103181227

0.977

nsdhl

0.965

hsd17b7

0.960

pdss1

0.942

pdss2

0.942

erg28

0.941

ENSCMIP00000034200

0.920

fnta

0.918

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000034200	fdft1	ENSCMIP00000034200	ENSCMIP00000000066	Gp_dh_N domain-containing protein.	Uncharacterized protein.	0.920
LOC103181227	erg28	ENSCMIP00000044773	ENSCMIP00000028868	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.981
LOC103181227	fdft1	ENSCMIP00000044773	ENSCMIP00000000066	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.977
LOC103181227	hsd17b7	ENSCMIP00000044773	ENSCMIP00000045905	Uncharacterized protein; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.963
LOC103181227	nsdhl	ENSCMIP00000044773	ENSCMIP00000008739	Uncharacterized protein; Belongs to the cytochrome P450 family.	3Beta_HSD domain-containing protein.	0.965
LOC103181227	sc5d	ENSCMIP00000044773	ENSCMIP00000027110	Uncharacterized protein; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.965
LOC103181227	sqle	ENSCMIP00000044773	ENSCMIP00000025529	Uncharacterized protein; Belongs to the cytochrome P450 family.	Squalene monooxygenase.	0.987
erg28	LOC103181227	ENSCMIP00000028868	ENSCMIP00000044773	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.981
erg28	fdft1	ENSCMIP00000028868	ENSCMIP00000000066	Uncharacterized protein.	Uncharacterized protein.	0.941
erg28	hsd17b7	ENSCMIP00000028868	ENSCMIP00000045905	Uncharacterized protein.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.949
erg28	nsdhl	ENSCMIP00000028868	ENSCMIP00000008739	Uncharacterized protein.	3Beta_HSD domain-containing protein.	0.826
erg28	sc5d	ENSCMIP00000028868	ENSCMIP00000027110	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.948
erg28	sqle	ENSCMIP00000028868	ENSCMIP00000025529	Uncharacterized protein.	Squalene monooxygenase.	0.681
fdft1	ENSCMIP00000034200	ENSCMIP00000000066	ENSCMIP00000034200	Uncharacterized protein.	Gp_dh_N domain-containing protein.	0.920
fdft1	LOC103181227	ENSCMIP00000000066	ENSCMIP00000044773	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.977
fdft1	erg28	ENSCMIP00000000066	ENSCMIP00000028868	Uncharacterized protein.	Uncharacterized protein.	0.941
fdft1	fnta	ENSCMIP00000000066	ENSCMIP00000000047	Uncharacterized protein.	Uncharacterized protein.	0.918
fdft1	hsd17b7	ENSCMIP00000000066	ENSCMIP00000045905	Uncharacterized protein.	Hydroxysteroid (17-beta) dehydrogenase 7.	0.960
fdft1	nsdhl	ENSCMIP00000000066	ENSCMIP00000008739	Uncharacterized protein.	3Beta_HSD domain-containing protein.	0.965
fdft1	pdss1	ENSCMIP00000000066	ENSCMIP00000002999	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.942