STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctsbPept_C1 domain-containing protein; Belongs to the peptidase C1 family. (269 aa)    
Predicted Functional Partners:
bcl2l1
BH4_2 domain-containing protein.
     
 0.909
Bcl2
BH4_2 domain-containing protein.
     
 0.908
lamp1
Lysosome-associated membrane glycoprotein 1-like protein.
   
 
 0.845
csta
Cystatin B (Stefin B); Belongs to the cystatin family.
   
 0.827
ctsd
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.773
lamp2
Uncharacterized protein.
   
 
 0.703
birc5
Uncharacterized protein.
     
 0.682
furin
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
     
 0.670
ENSCMIP00000009542
EF-hand domain-containing protein.
   
  
 0.660
xiap
RING-type domain-containing protein.
     
 0.659
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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