ENSCMIP00000001043 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001043

MAM domain-containing protein. (144 aa)

Predicted Functional Partners:

ctnnb1

0.778

ptpre

0.765

ENSCMIP00000009338

0.761

ptpra

0.621

ppm1m

0.612

ENSCMIP00000012919

0.609

kit

0.609

enpp5

0.587

dhx37

0.508

Pts

0.503

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001043	ENSCMIP00000009338	ENSCMIP00000001043	ENSCMIP00000009338	MAM domain-containing protein.	Uncharacterized protein.	0.761
ENSCMIP00000001043	ENSCMIP00000012919	ENSCMIP00000001043	ENSCMIP00000012919	MAM domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.609
ENSCMIP00000001043	Pts	ENSCMIP00000001043	ENSCMIP00000006522	MAM domain-containing protein.	6-pyruvoyl tetrahydrobiopterin synthase-like protein.	0.503
ENSCMIP00000001043	ctnnb1	ENSCMIP00000001043	ENSCMIP00000023661	MAM domain-containing protein.	Uncharacterized protein.	0.778
ENSCMIP00000001043	dhx37	ENSCMIP00000001043	ENSCMIP00000012389	MAM domain-containing protein.	Uncharacterized protein.	0.508
ENSCMIP00000001043	enpp5	ENSCMIP00000001043	ENSCMIP00000023547	MAM domain-containing protein.	Uncharacterized protein.	0.587
ENSCMIP00000001043	kit	ENSCMIP00000001043	ENSCMIP00000029371	MAM domain-containing protein.	Mast/stem cell growth factor receptor.	0.609
ENSCMIP00000001043	ppm1m	ENSCMIP00000001043	ENSCMIP00000043859	MAM domain-containing protein.	PPM-type phosphatase domain-containing protein.	0.612
ENSCMIP00000001043	ptpra	ENSCMIP00000001043	ENSCMIP00000029189	MAM domain-containing protein.	Receptor-type tyrosine-protein phosphatase alpha.	0.621
ENSCMIP00000001043	ptpre	ENSCMIP00000001043	ENSCMIP00000041680	MAM domain-containing protein.	Uncharacterized protein.	0.765
ENSCMIP00000009338	ENSCMIP00000001043	ENSCMIP00000009338	ENSCMIP00000001043	Uncharacterized protein.	MAM domain-containing protein.	0.761
ENSCMIP00000012919	ENSCMIP00000001043	ENSCMIP00000012919	ENSCMIP00000001043	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	MAM domain-containing protein.	0.609
Pts	ENSCMIP00000001043	ENSCMIP00000006522	ENSCMIP00000001043	6-pyruvoyl tetrahydrobiopterin synthase-like protein.	MAM domain-containing protein.	0.503
Pts	ptpra	ENSCMIP00000006522	ENSCMIP00000029189	6-pyruvoyl tetrahydrobiopterin synthase-like protein.	Receptor-type tyrosine-protein phosphatase alpha.	0.792
Pts	ptpre	ENSCMIP00000006522	ENSCMIP00000041680	6-pyruvoyl tetrahydrobiopterin synthase-like protein.	Uncharacterized protein.	0.497
ctnnb1	ENSCMIP00000001043	ENSCMIP00000023661	ENSCMIP00000001043	Uncharacterized protein.	MAM domain-containing protein.	0.778
dhx37	ENSCMIP00000001043	ENSCMIP00000012389	ENSCMIP00000001043	Uncharacterized protein.	MAM domain-containing protein.	0.508
enpp5	ENSCMIP00000001043	ENSCMIP00000023547	ENSCMIP00000001043	Uncharacterized protein.	MAM domain-containing protein.	0.587
kit	ENSCMIP00000001043	ENSCMIP00000029371	ENSCMIP00000001043	Mast/stem cell growth factor receptor.	MAM domain-containing protein.	0.609
ppm1m	ENSCMIP00000001043	ENSCMIP00000043859	ENSCMIP00000001043	PPM-type phosphatase domain-containing protein.	MAM domain-containing protein.	0.612