ENSCMIP00000001071 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001071

Tubulin domain-containing protein. (62 aa)

Predicted Functional Partners:

ENSCMIP00000035310

0.731

LOC103189482

0.708

LOC103190293

0.707

tubb4a

0.707

LOC103190292

0.705

LOC103174162

0.704

LOC103190292-2

0.704

LOC103184559

0.703

LOC103191424

0.700

tubb3

0.698

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001071	ENSCMIP00000035310	ENSCMIP00000001071	ENSCMIP00000035310	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.731
ENSCMIP00000001071	LOC103174162	ENSCMIP00000001071	ENSCMIP00000001344	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.704
ENSCMIP00000001071	LOC103184559	ENSCMIP00000001071	ENSCMIP00000029253	Tubulin domain-containing protein.	Tubulin domain-containing protein.	0.703
ENSCMIP00000001071	LOC103189482	ENSCMIP00000001071	ENSCMIP00000030072	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.708
ENSCMIP00000001071	LOC103190292	ENSCMIP00000001071	ENSCMIP00000014670	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.705
ENSCMIP00000001071	LOC103190292-2	ENSCMIP00000001071	ENSCMIP00000014681	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.704
ENSCMIP00000001071	LOC103190293	ENSCMIP00000001071	ENSCMIP00000014696	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.707
ENSCMIP00000001071	LOC103191424	ENSCMIP00000001071	ENSCMIP00000034540	Tubulin domain-containing protein.	Tubulin domain-containing protein.	0.700
ENSCMIP00000001071	tubb3	ENSCMIP00000001071	ENSCMIP00000035913	Tubulin domain-containing protein.	Tubulin domain-containing protein.	0.698
ENSCMIP00000001071	tubb4a	ENSCMIP00000001071	ENSCMIP00000039523	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.707
ENSCMIP00000035310	ENSCMIP00000001071	ENSCMIP00000035310	ENSCMIP00000001071	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.731
ENSCMIP00000035310	LOC103184559	ENSCMIP00000035310	ENSCMIP00000029253	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.950
ENSCMIP00000035310	LOC103191424	ENSCMIP00000035310	ENSCMIP00000034540	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.951
ENSCMIP00000035310	tubb3	ENSCMIP00000035310	ENSCMIP00000035913	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.950
LOC103174162	ENSCMIP00000001071	ENSCMIP00000001344	ENSCMIP00000001071	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.704
LOC103184559	ENSCMIP00000001071	ENSCMIP00000029253	ENSCMIP00000001071	Tubulin domain-containing protein.	Tubulin domain-containing protein.	0.703
LOC103184559	ENSCMIP00000035310	ENSCMIP00000029253	ENSCMIP00000035310	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.950
LOC103184559	LOC103189482	ENSCMIP00000029253	ENSCMIP00000030072	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.950
LOC103189482	ENSCMIP00000001071	ENSCMIP00000030072	ENSCMIP00000001071	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.708
LOC103189482	LOC103184559	ENSCMIP00000030072	ENSCMIP00000029253	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.950