ENSCMIP00000001097 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001097

TIL domain-containing protein. (125 aa)

Predicted Functional Partners:

adamts13

0.741

ENSCMIP00000038913

0.664

gp1bb

0.656

nup98

0.637

f8

0.630

f5

0.630

nup43

0.611

nup88

0.597

nup93

0.580

aaas

0.578

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001097	ENSCMIP00000038913	ENSCMIP00000001097	ENSCMIP00000038913	TIL domain-containing protein.	Nup214_FG domain-containing protein.	0.664
ENSCMIP00000001097	aaas	ENSCMIP00000001097	ENSCMIP00000040929	TIL domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.578
ENSCMIP00000001097	adamts13	ENSCMIP00000001097	ENSCMIP00000001617	TIL domain-containing protein.	Peptidase M12B domain-containing protein.	0.741
ENSCMIP00000001097	f5	ENSCMIP00000001097	ENSCMIP00000027689	TIL domain-containing protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.630
ENSCMIP00000001097	f8	ENSCMIP00000001097	ENSCMIP00000007556	TIL domain-containing protein.	Uncharacterized protein.	0.630
ENSCMIP00000001097	gp1bb	ENSCMIP00000001097	ENSCMIP00000033692	TIL domain-containing protein.	Uncharacterized protein.	0.656
ENSCMIP00000001097	nup43	ENSCMIP00000001097	ENSCMIP00000017808	TIL domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.611
ENSCMIP00000001097	nup88	ENSCMIP00000001097	ENSCMIP00000026082	TIL domain-containing protein.	Uncharacterized protein.	0.597
ENSCMIP00000001097	nup93	ENSCMIP00000001097	ENSCMIP00000027263	TIL domain-containing protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.580
ENSCMIP00000001097	nup98	ENSCMIP00000001097	ENSCMIP00000030981	TIL domain-containing protein.	Peptidase S59 domain-containing protein.	0.637
ENSCMIP00000038913	ENSCMIP00000001097	ENSCMIP00000038913	ENSCMIP00000001097	Nup214_FG domain-containing protein.	TIL domain-containing protein.	0.664
ENSCMIP00000038913	aaas	ENSCMIP00000038913	ENSCMIP00000040929	Nup214_FG domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.944
ENSCMIP00000038913	nup43	ENSCMIP00000038913	ENSCMIP00000017808	Nup214_FG domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.960
ENSCMIP00000038913	nup88	ENSCMIP00000038913	ENSCMIP00000026082	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.998
ENSCMIP00000038913	nup93	ENSCMIP00000038913	ENSCMIP00000027263	Nup214_FG domain-containing protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.983
ENSCMIP00000038913	nup98	ENSCMIP00000038913	ENSCMIP00000030981	Nup214_FG domain-containing protein.	Peptidase S59 domain-containing protein.	0.994
aaas	ENSCMIP00000001097	ENSCMIP00000040929	ENSCMIP00000001097	WD_REPEATS_REGION domain-containing protein.	TIL domain-containing protein.	0.578
aaas	ENSCMIP00000038913	ENSCMIP00000040929	ENSCMIP00000038913	WD_REPEATS_REGION domain-containing protein.	Nup214_FG domain-containing protein.	0.944
aaas	nup43	ENSCMIP00000040929	ENSCMIP00000017808	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
aaas	nup88	ENSCMIP00000040929	ENSCMIP00000026082	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997