LOC103189683 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC103189683

Uncharacterized protein. (463 aa)

Predicted Functional Partners:

arntl

0.654

ncor1

0.545

ENSCMIP00000033330

0.545

Ncor2

0.545

ube2i

0.544

gpi

0.513

sfxn5

0.512

ENSCMIP00000039780

0.512

clock

0.454

pasd1

0.454

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000033330	LOC103189683	ENSCMIP00000033330	ENSCMIP00000001102	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSCMIP00000039780	LOC103189683	ENSCMIP00000039780	ENSCMIP00000001102	Link domain-containing protein.	Uncharacterized protein.	0.512
LOC103189683	ENSCMIP00000033330	ENSCMIP00000001102	ENSCMIP00000033330	Uncharacterized protein.	Uncharacterized protein.	0.545
LOC103189683	ENSCMIP00000039780	ENSCMIP00000001102	ENSCMIP00000039780	Uncharacterized protein.	Link domain-containing protein.	0.512
LOC103189683	Ncor2	ENSCMIP00000001102	ENSCMIP00000033386	Uncharacterized protein.	Uncharacterized protein.	0.545
LOC103189683	arntl	ENSCMIP00000001102	ENSCMIP00000001799	Uncharacterized protein.	Uncharacterized protein.	0.654
LOC103189683	clock	ENSCMIP00000001102	ENSCMIP00000030567	Uncharacterized protein.	Uncharacterized protein.	0.454
LOC103189683	gpi	ENSCMIP00000001102	ENSCMIP00000036555	Uncharacterized protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.513
LOC103189683	ncor1	ENSCMIP00000001102	ENSCMIP00000029102	Uncharacterized protein.	Uncharacterized protein.	0.545
LOC103189683	pasd1	ENSCMIP00000001102	ENSCMIP00000030886	Uncharacterized protein.	Uncharacterized protein.	0.454
LOC103189683	sfxn5	ENSCMIP00000001102	ENSCMIP00000031469	Uncharacterized protein.	Uncharacterized protein.	0.512
LOC103189683	ube2i	ENSCMIP00000001102	ENSCMIP00000014219	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.544
Ncor2	LOC103189683	ENSCMIP00000033386	ENSCMIP00000001102	Uncharacterized protein.	Uncharacterized protein.	0.545
arntl	LOC103189683	ENSCMIP00000001799	ENSCMIP00000001102	Uncharacterized protein.	Uncharacterized protein.	0.654
arntl	clock	ENSCMIP00000001799	ENSCMIP00000030567	Uncharacterized protein.	Uncharacterized protein.	0.913
arntl	pasd1	ENSCMIP00000001799	ENSCMIP00000030886	Uncharacterized protein.	Uncharacterized protein.	0.913
clock	LOC103189683	ENSCMIP00000030567	ENSCMIP00000001102	Uncharacterized protein.	Uncharacterized protein.	0.454
clock	arntl	ENSCMIP00000030567	ENSCMIP00000001799	Uncharacterized protein.	Uncharacterized protein.	0.913
clock	pasd1	ENSCMIP00000030567	ENSCMIP00000030886	Uncharacterized protein.	Uncharacterized protein.	0.550
gpi	LOC103189683	ENSCMIP00000036555	ENSCMIP00000001102	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Uncharacterized protein.	0.513