poc5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

poc5

Uncharacterized protein. (596 aa)

Predicted Functional Partners:

cetn3

0.993

cetn2

0.899

centrin-1

0.899

iars2

0.819

scaper

0.781

iars1

0.764

wdr90

0.749

opa1

0.743

spice1

0.739

cep120

0.732

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
centrin-1	cep120	ENSCMIP00000020526	ENSCMIP00000028010	Uncharacterized protein.	Uncharacterized protein.	0.407
centrin-1	cetn2	ENSCMIP00000020526	ENSCMIP00000008779	Uncharacterized protein.	Uncharacterized protein.	0.545
centrin-1	cetn3	ENSCMIP00000020526	ENSCMIP00000040370	Uncharacterized protein.	Uncharacterized protein.	0.789
centrin-1	poc5	ENSCMIP00000020526	ENSCMIP00000001120	Uncharacterized protein.	Uncharacterized protein.	0.899
centrin-1	wdr90	ENSCMIP00000020526	ENSCMIP00000036826	Uncharacterized protein.	Uncharacterized protein.	0.736
cep120	centrin-1	ENSCMIP00000028010	ENSCMIP00000020526	Uncharacterized protein.	Uncharacterized protein.	0.407
cep120	cetn2	ENSCMIP00000028010	ENSCMIP00000008779	Uncharacterized protein.	Uncharacterized protein.	0.407
cep120	cetn3	ENSCMIP00000028010	ENSCMIP00000040370	Uncharacterized protein.	Uncharacterized protein.	0.626
cep120	poc5	ENSCMIP00000028010	ENSCMIP00000001120	Uncharacterized protein.	Uncharacterized protein.	0.732
cep120	spice1	ENSCMIP00000028010	ENSCMIP00000025978	Uncharacterized protein.	Uncharacterized protein.	0.924
cetn2	centrin-1	ENSCMIP00000008779	ENSCMIP00000020526	Uncharacterized protein.	Uncharacterized protein.	0.545
cetn2	cep120	ENSCMIP00000008779	ENSCMIP00000028010	Uncharacterized protein.	Uncharacterized protein.	0.407
cetn2	cetn3	ENSCMIP00000008779	ENSCMIP00000040370	Uncharacterized protein.	Uncharacterized protein.	0.788
cetn2	poc5	ENSCMIP00000008779	ENSCMIP00000001120	Uncharacterized protein.	Uncharacterized protein.	0.899
cetn2	wdr90	ENSCMIP00000008779	ENSCMIP00000036826	Uncharacterized protein.	Uncharacterized protein.	0.736
cetn3	centrin-1	ENSCMIP00000040370	ENSCMIP00000020526	Uncharacterized protein.	Uncharacterized protein.	0.789
cetn3	cep120	ENSCMIP00000040370	ENSCMIP00000028010	Uncharacterized protein.	Uncharacterized protein.	0.626
cetn3	cetn2	ENSCMIP00000040370	ENSCMIP00000008779	Uncharacterized protein.	Uncharacterized protein.	0.788
cetn3	poc5	ENSCMIP00000040370	ENSCMIP00000001120	Uncharacterized protein.	Uncharacterized protein.	0.993
cetn3	wdr90	ENSCMIP00000040370	ENSCMIP00000036826	Uncharacterized protein.	Uncharacterized protein.	0.723