trappc2l protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

trappc2l

Uncharacterized protein. (135 aa)

Predicted Functional Partners:

trappc8

0.999

trappc12

0.999

trappc4

0.999

trappc2

0.999

trappc3

0.999

trappc11

0.998

trappc10

0.998

trappc13

0.997

trappc9

0.996

ENSCMIP00000001722

0.986

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001722	trappc10	ENSCMIP00000001722	ENSCMIP00000043275	Uncharacterized protein.	Uncharacterized protein.	0.974
ENSCMIP00000001722	trappc11	ENSCMIP00000001722	ENSCMIP00000034142	Uncharacterized protein.	Uncharacterized protein.	0.977
ENSCMIP00000001722	trappc12	ENSCMIP00000001722	ENSCMIP00000014998	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.991
ENSCMIP00000001722	trappc13	ENSCMIP00000001722	ENSCMIP00000046227	Uncharacterized protein.	Uncharacterized protein.	0.972
ENSCMIP00000001722	trappc2	ENSCMIP00000001722	ENSCMIP00000021904	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSCMIP00000001722	trappc2l	ENSCMIP00000001722	ENSCMIP00000001127	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSCMIP00000001722	trappc3	ENSCMIP00000001722	ENSCMIP00000032759	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.980
ENSCMIP00000001722	trappc4	ENSCMIP00000001722	ENSCMIP00000017932	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.993
ENSCMIP00000001722	trappc8	ENSCMIP00000001722	ENSCMIP00000001330	Uncharacterized protein.	Uncharacterized protein.	0.978
ENSCMIP00000001722	trappc9	ENSCMIP00000001722	ENSCMIP00000037385	Uncharacterized protein.	Uncharacterized protein.	0.947
trappc10	ENSCMIP00000001722	ENSCMIP00000043275	ENSCMIP00000001722	Uncharacterized protein.	Uncharacterized protein.	0.974
trappc10	trappc11	ENSCMIP00000043275	ENSCMIP00000034142	Uncharacterized protein.	Uncharacterized protein.	0.947
trappc10	trappc12	ENSCMIP00000043275	ENSCMIP00000014998	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.971
trappc10	trappc13	ENSCMIP00000043275	ENSCMIP00000046227	Uncharacterized protein.	Uncharacterized protein.	0.979
trappc10	trappc2	ENSCMIP00000043275	ENSCMIP00000021904	Uncharacterized protein.	Uncharacterized protein.	0.997
trappc10	trappc2l	ENSCMIP00000043275	ENSCMIP00000001127	Uncharacterized protein.	Uncharacterized protein.	0.998
trappc10	trappc3	ENSCMIP00000043275	ENSCMIP00000032759	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.998
trappc10	trappc4	ENSCMIP00000043275	ENSCMIP00000017932	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
trappc10	trappc8	ENSCMIP00000043275	ENSCMIP00000001330	Uncharacterized protein.	Uncharacterized protein.	0.997
trappc10	trappc9	ENSCMIP00000043275	ENSCMIP00000037385	Uncharacterized protein.	Uncharacterized protein.	0.997