mgat1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

mgat1

Uncharacterized protein. (424 aa)

Predicted Functional Partners:

man2a2

0.944

man2a1

0.944

man1a2

0.935

man1a1

0.935

LOC103179580

0.935

fut8

0.747

LOC103177928

0.690

mgat2

0.690

gars1

0.678

mgat5

0.671

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103177928	fut8	ENSCMIP00000001039	ENSCMIP00000022456	Uncharacterized protein.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.947
LOC103177928	man2a1	ENSCMIP00000001039	ENSCMIP00000043498	Uncharacterized protein.	Alpha-mannosidase.	0.933
LOC103177928	man2a2	ENSCMIP00000001039	ENSCMIP00000021555	Uncharacterized protein.	Alpha-mannosidase.	0.933
LOC103177928	mgat1	ENSCMIP00000001039	ENSCMIP00000001160	Uncharacterized protein.	Uncharacterized protein.	0.690
LOC103177928	mgat2	ENSCMIP00000001039	ENSCMIP00000039962	Uncharacterized protein.	Uncharacterized protein.	0.903
LOC103177928	mgat5	ENSCMIP00000001039	ENSCMIP00000017292	Uncharacterized protein.	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like protein.	0.484
LOC103179580	man1a1	ENSCMIP00000045884	ENSCMIP00000012518	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.901
LOC103179580	man1a2	ENSCMIP00000045884	ENSCMIP00000003212	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.902
LOC103179580	mgat1	ENSCMIP00000045884	ENSCMIP00000001160	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.935
fut8	LOC103177928	ENSCMIP00000022456	ENSCMIP00000001039	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.947
fut8	man2a1	ENSCMIP00000022456	ENSCMIP00000043498	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-mannosidase.	0.955
fut8	man2a2	ENSCMIP00000022456	ENSCMIP00000021555	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-mannosidase.	0.955
fut8	mgat1	ENSCMIP00000022456	ENSCMIP00000001160	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.747
fut8	mgat2	ENSCMIP00000022456	ENSCMIP00000039962	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.947
fut8	mgat5	ENSCMIP00000022456	ENSCMIP00000017292	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like protein.	0.611
gars1	mgat1	ENSCMIP00000013346	ENSCMIP00000001160	Uncharacterized protein.	Uncharacterized protein.	0.678
man1a1	LOC103179580	ENSCMIP00000012518	ENSCMIP00000045884	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.901
man1a1	man1a2	ENSCMIP00000012518	ENSCMIP00000003212	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.901
man1a1	mgat1	ENSCMIP00000012518	ENSCMIP00000001160	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.935
man1a2	LOC103179580	ENSCMIP00000003212	ENSCMIP00000045884	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.902