LOC103174131 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103174131

TPR_REGION domain-containing protein. (328 aa)

Predicted Functional Partners:

leo1

0.729

rsad2

0.627

LOC103190351

0.588

bbs9

0.574

ints13

0.552

bbs7

0.542

ints1

0.540

ints11

0.516

ttc8

0.512

rbbp5

0.497

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103174131	LOC103190351	ENSCMIP00000001173	ENSCMIP00000025171	TPR_REGION domain-containing protein.	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	0.588
LOC103174131	bbs7	ENSCMIP00000001173	ENSCMIP00000019829	TPR_REGION domain-containing protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.542
LOC103174131	bbs9	ENSCMIP00000001173	ENSCMIP00000035601	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.574
LOC103174131	ints1	ENSCMIP00000001173	ENSCMIP00000026150	TPR_REGION domain-containing protein.	DUF3677 domain-containing protein.	0.540
LOC103174131	ints11	ENSCMIP00000001173	ENSCMIP00000006873	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.516
LOC103174131	ints13	ENSCMIP00000001173	ENSCMIP00000028151	TPR_REGION domain-containing protein.	Cell cycle regulator Mat89Bb-like protein.	0.552
LOC103174131	leo1	ENSCMIP00000001173	ENSCMIP00000047145	TPR_REGION domain-containing protein.	RNA polymerase-associated protein LEO1.	0.729
LOC103174131	rbbp5	ENSCMIP00000001173	ENSCMIP00000034553	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.497
LOC103174131	rsad2	ENSCMIP00000001173	ENSCMIP00000018018	TPR_REGION domain-containing protein.	Elp3 domain-containing protein.	0.627
LOC103174131	ttc8	ENSCMIP00000001173	ENSCMIP00000006448	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.512
LOC103190351	LOC103174131	ENSCMIP00000025171	ENSCMIP00000001173	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	TPR_REGION domain-containing protein.	0.588
LOC103190351	rsad2	ENSCMIP00000025171	ENSCMIP00000018018	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.	Elp3 domain-containing protein.	0.964
bbs7	LOC103174131	ENSCMIP00000019829	ENSCMIP00000001173	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	TPR_REGION domain-containing protein.	0.542
bbs7	bbs9	ENSCMIP00000019829	ENSCMIP00000035601	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.999
bbs7	ttc8	ENSCMIP00000019829	ENSCMIP00000006448	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	TPR_REGION domain-containing protein.	0.999
bbs9	LOC103174131	ENSCMIP00000035601	ENSCMIP00000001173	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.574
bbs9	bbs7	ENSCMIP00000035601	ENSCMIP00000019829	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
bbs9	ttc8	ENSCMIP00000035601	ENSCMIP00000006448	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
ints1	LOC103174131	ENSCMIP00000026150	ENSCMIP00000001173	DUF3677 domain-containing protein.	TPR_REGION domain-containing protein.	0.540
ints1	ints11	ENSCMIP00000026150	ENSCMIP00000006873	DUF3677 domain-containing protein.	Uncharacterized protein.	0.999