sv2c protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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[Homology]

Score

sv2c

MFS domain-containing protein. (724 aa)

Predicted Functional Partners:

LOC103188197

0.907

sv2b

0.902

lamb3

0.700

ENSCMIP00000038818

0.699

Lamc2

0.699

lamc1

0.699

chrnd

0.689

Chrna5

0.688

htr3a

0.686

lama4

0.680

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chrna5	chrnd	ENSCMIP00000001751	ENSCMIP00000021126	Uncharacterized protein.	Uncharacterized protein.	0.790
Chrna5	sv2c	ENSCMIP00000001751	ENSCMIP00000001177	Uncharacterized protein.	MFS domain-containing protein.	0.688
ENSCMIP00000038818	LOC103188197	ENSCMIP00000038818	ENSCMIP00000010493	Laminin N-terminal domain-containing protein.	MFS domain-containing protein.	0.687
ENSCMIP00000038818	lama4	ENSCMIP00000038818	ENSCMIP00000012047	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.517
ENSCMIP00000038818	lamb3	ENSCMIP00000038818	ENSCMIP00000005097	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.745
ENSCMIP00000038818	sv2b	ENSCMIP00000038818	ENSCMIP00000021827	Laminin N-terminal domain-containing protein.	MFS domain-containing protein.	0.699
ENSCMIP00000038818	sv2c	ENSCMIP00000038818	ENSCMIP00000001177	Laminin N-terminal domain-containing protein.	MFS domain-containing protein.	0.699
LOC103188197	ENSCMIP00000038818	ENSCMIP00000010493	ENSCMIP00000038818	MFS domain-containing protein.	Laminin N-terminal domain-containing protein.	0.687
LOC103188197	Lamc2	ENSCMIP00000010493	ENSCMIP00000042932	MFS domain-containing protein.	Uncharacterized protein.	0.687
LOC103188197	lama4	ENSCMIP00000010493	ENSCMIP00000012047	MFS domain-containing protein.	Uncharacterized protein.	0.668
LOC103188197	lamb3	ENSCMIP00000010493	ENSCMIP00000005097	MFS domain-containing protein.	Uncharacterized protein.	0.700
LOC103188197	lamc1	ENSCMIP00000010493	ENSCMIP00000043018	MFS domain-containing protein.	Uncharacterized protein.	0.687
LOC103188197	sv2b	ENSCMIP00000010493	ENSCMIP00000021827	MFS domain-containing protein.	MFS domain-containing protein.	0.907
LOC103188197	sv2c	ENSCMIP00000010493	ENSCMIP00000001177	MFS domain-containing protein.	MFS domain-containing protein.	0.907
Lamc2	LOC103188197	ENSCMIP00000042932	ENSCMIP00000010493	Uncharacterized protein.	MFS domain-containing protein.	0.687
Lamc2	lama4	ENSCMIP00000042932	ENSCMIP00000012047	Uncharacterized protein.	Uncharacterized protein.	0.517
Lamc2	lamb3	ENSCMIP00000042932	ENSCMIP00000005097	Uncharacterized protein.	Uncharacterized protein.	0.745
Lamc2	sv2b	ENSCMIP00000042932	ENSCMIP00000021827	Uncharacterized protein.	MFS domain-containing protein.	0.699
Lamc2	sv2c	ENSCMIP00000042932	ENSCMIP00000001177	Uncharacterized protein.	MFS domain-containing protein.	0.699
chrnd	Chrna5	ENSCMIP00000021126	ENSCMIP00000001751	Uncharacterized protein.	Uncharacterized protein.	0.790