serbp1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

serbp1

HABP4_PAI-RBP1 domain-containing protein. (415 aa)

Predicted Functional Partners:

rps3

0.988

rps27a

0.982

rpl7a

0.981

rps3a

0.981

ENSCMIP00000028556

0.981

rps12

0.979

rpl34

0.977

ncl

0.955

rps2

0.954

rps10

0.949

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000028556	ncl	ENSCMIP00000028556	ENSCMIP00000020371	Uncharacterized protein.	Uncharacterized protein.	0.516
ENSCMIP00000028556	rpl34	ENSCMIP00000028556	ENSCMIP00000015347	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCMIP00000028556	rpl7a	ENSCMIP00000028556	ENSCMIP00000006895	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.999
ENSCMIP00000028556	rps10	ENSCMIP00000028556	ENSCMIP00000042220	Uncharacterized protein.	S10_plectin domain-containing protein.	0.999
ENSCMIP00000028556	rps12	ENSCMIP00000028556	ENSCMIP00000040644	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
ENSCMIP00000028556	rps2	ENSCMIP00000028556	ENSCMIP00000042049	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
ENSCMIP00000028556	rps27a	ENSCMIP00000028556	ENSCMIP00000006356	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.999
ENSCMIP00000028556	rps3	ENSCMIP00000028556	ENSCMIP00000043843	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
ENSCMIP00000028556	rps3a	ENSCMIP00000028556	ENSCMIP00000022757	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
ENSCMIP00000028556	serbp1	ENSCMIP00000028556	ENSCMIP00000001183	Uncharacterized protein.	HABP4_PAI-RBP1 domain-containing protein.	0.981
ncl	ENSCMIP00000028556	ENSCMIP00000020371	ENSCMIP00000028556	Uncharacterized protein.	Uncharacterized protein.	0.516
ncl	rpl7a	ENSCMIP00000020371	ENSCMIP00000006895	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.655
ncl	rps10	ENSCMIP00000020371	ENSCMIP00000042220	Uncharacterized protein.	S10_plectin domain-containing protein.	0.490
ncl	rps12	ENSCMIP00000020371	ENSCMIP00000040644	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.559
ncl	rps2	ENSCMIP00000020371	ENSCMIP00000042049	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.737
ncl	rps27a	ENSCMIP00000020371	ENSCMIP00000006356	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.586
ncl	rps3	ENSCMIP00000020371	ENSCMIP00000043843	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.682
ncl	rps3a	ENSCMIP00000020371	ENSCMIP00000022757	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.691
ncl	serbp1	ENSCMIP00000020371	ENSCMIP00000001183	Uncharacterized protein.	HABP4_PAI-RBP1 domain-containing protein.	0.955
rpl34	ENSCMIP00000028556	ENSCMIP00000015347	ENSCMIP00000028556	Uncharacterized protein.	Uncharacterized protein.	0.999