ENSCMIP00000001239 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001239

Uncharacterized protein. (70 aa)

Predicted Functional Partners:

Atox1

0.939

atp7a

0.912

atp7b

0.912

ENSCMIP00000002032

0.898

dck

0.897

ENSCMIP00000015122

0.884

LOC103173882

0.839

ENSCMIP00000023961

0.839

ENSCMIP00000023968

0.839

ENSCMIP00000023973

0.839

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atox1	ENSCMIP00000001239	ENSCMIP00000000696	ENSCMIP00000001239	Uncharacterized protein.	Uncharacterized protein.	0.939
Atox1	ENSCMIP00000002032	ENSCMIP00000000696	ENSCMIP00000002032	Uncharacterized protein.	Uncharacterized protein.	0.942
Atox1	ENSCMIP00000015122	ENSCMIP00000000696	ENSCMIP00000015122	Uncharacterized protein.	Uncharacterized protein.	0.889
Atox1	ENSCMIP00000023961	ENSCMIP00000000696	ENSCMIP00000023961	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.539
Atox1	ENSCMIP00000023968	ENSCMIP00000000696	ENSCMIP00000023968	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.539
Atox1	ENSCMIP00000023973	ENSCMIP00000000696	ENSCMIP00000023973	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.539
Atox1	LOC103173882	ENSCMIP00000000696	ENSCMIP00000005055	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.539
Atox1	atp7a	ENSCMIP00000000696	ENSCMIP00000040300	Uncharacterized protein.	Uncharacterized protein.	0.968
Atox1	atp7b	ENSCMIP00000000696	ENSCMIP00000044424	Uncharacterized protein.	Uncharacterized protein.	0.968
ENSCMIP00000001239	Atox1	ENSCMIP00000001239	ENSCMIP00000000696	Uncharacterized protein.	Uncharacterized protein.	0.939
ENSCMIP00000001239	ENSCMIP00000002032	ENSCMIP00000001239	ENSCMIP00000002032	Uncharacterized protein.	Uncharacterized protein.	0.898
ENSCMIP00000001239	ENSCMIP00000015122	ENSCMIP00000001239	ENSCMIP00000015122	Uncharacterized protein.	Uncharacterized protein.	0.884
ENSCMIP00000001239	ENSCMIP00000023961	ENSCMIP00000001239	ENSCMIP00000023961	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.839
ENSCMIP00000001239	ENSCMIP00000023968	ENSCMIP00000001239	ENSCMIP00000023968	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.839
ENSCMIP00000001239	ENSCMIP00000023973	ENSCMIP00000001239	ENSCMIP00000023973	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.839
ENSCMIP00000001239	LOC103173882	ENSCMIP00000001239	ENSCMIP00000005055	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.839
ENSCMIP00000001239	atp7a	ENSCMIP00000001239	ENSCMIP00000040300	Uncharacterized protein.	Uncharacterized protein.	0.912
ENSCMIP00000001239	atp7b	ENSCMIP00000001239	ENSCMIP00000044424	Uncharacterized protein.	Uncharacterized protein.	0.912
ENSCMIP00000001239	dck	ENSCMIP00000001239	ENSCMIP00000013110	Uncharacterized protein.	dNK domain-containing protein.	0.897
ENSCMIP00000002032	Atox1	ENSCMIP00000002032	ENSCMIP00000000696	Uncharacterized protein.	Uncharacterized protein.	0.942