STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
herc4HECT domain-containing protein. (1057 aa)    
Predicted Functional Partners:
fam13a
Rho-GAP domain-containing protein.
      
 0.692
mypn
Uncharacterized protein.
      
 0.658
pigy
Phosphatidylinositol glycan anchor biosynthesis, class Y.
      
 0.658
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
   
 
 0.574
rps27a
Ubiquitin-like domain-containing protein.
    
 0.573
ube2l3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.560
rsad2
Elp3 domain-containing protein.
   
 
 0.555
uba52
Ribosomal protein L40-like isoform 1.
   
  0.526
epsti1
CUE domain-containing protein.
   
  
 0.512
Ubc
Ubiquitin-like domain-containing protein.
   
 0.504
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.