Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc33a1Uncharacterized protein. (544 aa)    
Predicted Functional Partners:
LOC103189521
Glyco_trans_2-like domain-containing protein.
     
 0.909
LOC103189519
Ig-like domain-containing protein.
     
  0.900
st8sia1
Alpha2,8-sialyltransferase ST8Sia I; Belongs to the glycosyltransferase 29 family.
     
  0.900
dnajb9
J domain-containing protein.
   
 
 0.711
slc23a1
Uncharacterized protein.
   
  
 0.688
nipa1
Magnesium transporter NIPA1-like protein.
   
  
 0.667
slc25a42
Solute carrier family 25 member 42; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.655
ppcs
DFP domain-containing protein.
 
    
 0.641
slc30a5
Uncharacterized protein.
   
  
 0.627
slc35a5
Uncharacterized protein.
   
  
 0.607
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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