STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103175708Uncharacterized protein. (249 aa)    
Predicted Functional Partners:
mecr
PKS_ER domain-containing protein.
    
 
 0.623
LOC103189583
Uncharacterized protein.
      
 0.587
mrps18a
Mitochondrial ribosomal protein S18A.
    
 0.572
mmaa
Uncharacterized protein.
      
 0.490
dnajc4
J domain-containing protein.
      
 0.485
gfm2
Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
      
 0.485
mterf4
mTERF domain-containing protein 2-like protein.
      
 0.484
Rpl36al
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
    
 
 0.445
ENSCMIP00000005060
NDK domain-containing protein; Belongs to the NDK family.
    
 0.420
LOC103187939
Uncharacterized protein; Belongs to the NDK family.
    
 0.420
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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