Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chtf8Chromosome transmission fidelity protein 8-like protein. (136 aa)    
Predicted Functional Partners:
dscc1
Uncharacterized protein.
   
 0.999
chtf18
AAA domain-containing protein.
   
 0.997
rfc5
AAA domain-containing protein.
   
 0.994
rfc4
AAA domain-containing protein.
   
 0.988
rfc3
AAA domain-containing protein.
   
 0.967
rfc2
AAA domain-containing protein.
   
 0.964
ddx11
Putative ATP-dependent RNA helicase DDX11-like protein 8.
   
 
 0.935
tipin
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
    
 
 0.902
wdhd1
Uncharacterized protein.
   
 
 0.896
smc3
Structural maintenance of chromosomes protein.
   
 
 0.883
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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