Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103179662Uncharacterized protein. (677 aa)    
Predicted Functional Partners:
ENSCMIP00000007583
Calponin-homology (CH) domain-containing protein.
 
      0.900
LOC103173997
Uncharacterized protein.
 
     0.899
ENSCMIP00000002996
S10_plectin domain-containing protein.
 
      0.884
LOC103190064
Uncharacterized protein.
   
 0.798
LOC103179651
Uncharacterized protein.
   
 0.709
itgb4
Integrin beta.
   
 0.655
ctnnb1
Uncharacterized protein.
   
 0.605
sptan1
Uncharacterized protein.
   
 0.591
LOC103173381
Uncharacterized protein.
   
 
 0.572
Dsg4
Uncharacterized protein.
   
 0.524
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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