STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000001384Uncharacterized protein. (523 aa)    
Predicted Functional Partners:
ENSCMIP00000007583
Calponin-homology (CH) domain-containing protein.
 
      0.899
ENSCMIP00000002996
S10_plectin domain-containing protein.
 
      0.898
itgb4
Integrin beta.
   
 0.662
LOC103190064
Uncharacterized protein.
   
 0.644
LOC103173997
Uncharacterized protein.
 
     
0.625
LOC103179651
Uncharacterized protein.
   
 0.578
itsn2
Uncharacterized protein.
    
 0.543
ctnnb1
Uncharacterized protein.
    
 0.521
LOC103182598
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
  
   
 0.510
ENSCMIP00000012615
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
  
   
 0.505
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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