STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000001384Uncharacterized protein. (523 aa)    
Predicted Functional Partners:
ENSCMIP00000007583
Calponin-homology (CH) domain-containing protein.
 
      0.899
ENSCMIP00000002996
S10_plectin domain-containing protein.
 
      0.898
LOC103190064
Uncharacterized protein.
   
 0.798
LOC103179651
Uncharacterized protein.
   
 0.709
itgb4
Integrin beta.
   
 0.655
LOC103173997
Uncharacterized protein.
 
     
0.625
ctnnb1
Uncharacterized protein.
   
 0.605
sptan1
Uncharacterized protein.
   
 0.591
LOC103173381
Uncharacterized protein.
   
 
 0.572
ENSCMIP00000003910
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
 0.561
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.