tsnare1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tsnare1

t-SNARE coiled-coil homology domain-containing protein. (315 aa)

Predicted Functional Partners:

ykt6

0.900

nsf

0.850

LOC103172741

0.796

napb

0.796

bet1l

0.795

bet1

0.795

stx5

0.786

vps16

0.779

napg

0.764

vps18

0.763

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172741	bet1	ENSCMIP00000006718	ENSCMIP00000040785	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.884
LOC103172741	bet1l	ENSCMIP00000006718	ENSCMIP00000018164	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.807
LOC103172741	napg	ENSCMIP00000006718	ENSCMIP00000031919	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.889
LOC103172741	nsf	ENSCMIP00000006718	ENSCMIP00000019776	Uncharacterized protein.	Uncharacterized protein.	0.970
LOC103172741	stx5	ENSCMIP00000006718	ENSCMIP00000008838	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.956
LOC103172741	tsnare1	ENSCMIP00000006718	ENSCMIP00000001410	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.796
LOC103172741	ykt6	ENSCMIP00000006718	ENSCMIP00000022733	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.928
bet1	LOC103172741	ENSCMIP00000040785	ENSCMIP00000006718	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.884
bet1	napb	ENSCMIP00000040785	ENSCMIP00000019535	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.884
bet1	napg	ENSCMIP00000040785	ENSCMIP00000031919	t-SNARE coiled-coil homology domain-containing protein.	TPR_REGION domain-containing protein.	0.799
bet1	nsf	ENSCMIP00000040785	ENSCMIP00000019776	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.895
bet1	stx5	ENSCMIP00000040785	ENSCMIP00000008838	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.999
bet1	tsnare1	ENSCMIP00000040785	ENSCMIP00000001410	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.795
bet1	ykt6	ENSCMIP00000040785	ENSCMIP00000022733	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.999
bet1l	LOC103172741	ENSCMIP00000018164	ENSCMIP00000006718	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.807
bet1l	napb	ENSCMIP00000018164	ENSCMIP00000019535	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.807
bet1l	napg	ENSCMIP00000018164	ENSCMIP00000031919	t-SNARE coiled-coil homology domain-containing protein.	TPR_REGION domain-containing protein.	0.744
bet1l	nsf	ENSCMIP00000018164	ENSCMIP00000019776	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.827
bet1l	stx5	ENSCMIP00000018164	ENSCMIP00000008838	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.991
bet1l	tsnare1	ENSCMIP00000018164	ENSCMIP00000001410	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.795