STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
utp4Cirhin. (683 aa)    
Predicted Functional Partners:
wdr43
WD_REPEATS_REGION domain-containing protein.
   
 0.999
utp15
WD_REPEATS_REGION domain-containing protein.
   
 0.999
heatr1
BP28CT domain-containing protein.
   
 0.999
wdr75
Uncharacterized protein.
   
 0.999
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.999
wdr36
WD_REPEATS_REGION domain-containing protein.
   
 0.999
pwp2
WD_REPEATS_REGION domain-containing protein.
   
 0.999
wdr3
WD_REPEATS_REGION domain-containing protein.
   
 0.998
wdr46
WD_REPEATS_REGION domain-containing protein.
   
 0.998
tbl3
WD_REPEATS_REGION domain-containing protein.
   
 0.998
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.