utp4 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

utp4

Cirhin. (683 aa)

Predicted Functional Partners:

rrp9

0.999

wdr43

0.999

wdr3

0.999

wdr46

0.999

utp6

0.999

utp15

0.999

bms1

0.999

nol6

0.999

mphosph10

0.999

nop58

0.999

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bms1	mphosph10	ENSCMIP00000021109	ENSCMIP00000024568	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.999
bms1	nol6	ENSCMIP00000021109	ENSCMIP00000023988	Bms1-type G domain-containing protein.	Nucleolar protein 6.	0.999
bms1	nop58	ENSCMIP00000021109	ENSCMIP00000030744	Bms1-type G domain-containing protein.	Nop domain-containing protein.	0.997
bms1	rrp9	ENSCMIP00000021109	ENSCMIP00000002157	Bms1-type G domain-containing protein.	U3 small nucleolar RNA-interacting protein 2-like protein.	0.996
bms1	utp15	ENSCMIP00000021109	ENSCMIP00000018453	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
bms1	utp4	ENSCMIP00000021109	ENSCMIP00000001414	Bms1-type G domain-containing protein.	Cirhin.	0.999
bms1	utp6	ENSCMIP00000021109	ENSCMIP00000012349	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.998
bms1	wdr3	ENSCMIP00000021109	ENSCMIP00000003535	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
bms1	wdr43	ENSCMIP00000021109	ENSCMIP00000003299	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
bms1	wdr46	ENSCMIP00000021109	ENSCMIP00000006995	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
mphosph10	bms1	ENSCMIP00000024568	ENSCMIP00000021109	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	Bms1-type G domain-containing protein.	0.999
mphosph10	nol6	ENSCMIP00000024568	ENSCMIP00000023988	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	Nucleolar protein 6.	0.998
mphosph10	nop58	ENSCMIP00000024568	ENSCMIP00000030744	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	Nop domain-containing protein.	0.998
mphosph10	rrp9	ENSCMIP00000024568	ENSCMIP00000002157	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	U3 small nucleolar RNA-interacting protein 2-like protein.	0.994
mphosph10	utp15	ENSCMIP00000024568	ENSCMIP00000018453	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	WD_REPEATS_REGION domain-containing protein.	0.997
mphosph10	utp4	ENSCMIP00000024568	ENSCMIP00000001414	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	Cirhin.	0.999
mphosph10	utp6	ENSCMIP00000024568	ENSCMIP00000012349	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	Uncharacterized protein.	0.996
mphosph10	wdr3	ENSCMIP00000024568	ENSCMIP00000003535	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	WD_REPEATS_REGION domain-containing protein.	0.997
mphosph10	wdr43	ENSCMIP00000024568	ENSCMIP00000003299	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	WD_REPEATS_REGION domain-containing protein.	0.999
mphosph10	wdr46	ENSCMIP00000024568	ENSCMIP00000006995	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	WD_REPEATS_REGION domain-containing protein.	0.997