slc35f4 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

slc35f4

Uncharacterized protein. (417 aa)

Predicted Functional Partners:

ebna1bp2

0.674

tmem266

0.671

anapc13

0.669

tsr3

0.651

LOC103172154

0.639

kcne4

0.637

stard3nl

0.631

blzf1

0.587

ENSCMIP00000022971

0.587

ENSCMIP00000022975

0.587

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000022971	slc35f4	ENSCMIP00000022971	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.587
ENSCMIP00000022975	slc35f4	ENSCMIP00000022975	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.587
LOC103172154	anapc13	ENSCMIP00000000209	ENSCMIP00000012999	Uncharacterized protein.	Uncharacterized protein.	0.591
LOC103172154	slc35f4	ENSCMIP00000000209	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.639
LOC103172154	tsr3	ENSCMIP00000000209	ENSCMIP00000031141	Uncharacterized protein.	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	0.483
anapc13	LOC103172154	ENSCMIP00000012999	ENSCMIP00000000209	Uncharacterized protein.	Uncharacterized protein.	0.591
anapc13	slc35f4	ENSCMIP00000012999	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.669
anapc13	stard3nl	ENSCMIP00000012999	ENSCMIP00000035430	Uncharacterized protein.	MENTAL domain-containing protein.	0.484
anapc13	tsr3	ENSCMIP00000012999	ENSCMIP00000031141	Uncharacterized protein.	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	0.635
blzf1	slc35f4	ENSCMIP00000011834	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.587
ebna1bp2	slc35f4	ENSCMIP00000020137	ENSCMIP00000001433	Uncharacterized protein.	Uncharacterized protein.	0.674
kcne4	slc35f4	ENSCMIP00000043087	ENSCMIP00000001433	Potassium voltage-gated channel subfamily E member 4-like protein.	Uncharacterized protein.	0.637
kcne4	tmem266	ENSCMIP00000043087	ENSCMIP00000015781	Potassium voltage-gated channel subfamily E member 4-like protein.	Uncharacterized protein.	0.613
slc35f4	ENSCMIP00000022971	ENSCMIP00000001433	ENSCMIP00000022971	Uncharacterized protein.	Uncharacterized protein.	0.587
slc35f4	ENSCMIP00000022975	ENSCMIP00000001433	ENSCMIP00000022975	Uncharacterized protein.	Uncharacterized protein.	0.587
slc35f4	LOC103172154	ENSCMIP00000001433	ENSCMIP00000000209	Uncharacterized protein.	Uncharacterized protein.	0.639
slc35f4	anapc13	ENSCMIP00000001433	ENSCMIP00000012999	Uncharacterized protein.	Uncharacterized protein.	0.669
slc35f4	blzf1	ENSCMIP00000001433	ENSCMIP00000011834	Uncharacterized protein.	Uncharacterized protein.	0.587
slc35f4	ebna1bp2	ENSCMIP00000001433	ENSCMIP00000020137	Uncharacterized protein.	Uncharacterized protein.	0.674
slc35f4	kcne4	ENSCMIP00000001433	ENSCMIP00000043087	Uncharacterized protein.	Potassium voltage-gated channel subfamily E member 4-like protein.	0.637