STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103171855Uncharacterized protein. (467 aa)    
Predicted Functional Partners:
ndufa13
Uncharacterized protein.
   
 0.718
xiap
RING-type domain-containing protein.
    
 
 0.712
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
    
 0.663
pink1
Protein kinase domain-containing protein.
    
 
 0.662
eci2
ACB domain-containing protein.
    
 0.641
birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.640
armc8
Uncharacterized protein.
    
 
 0.608
psmd1
26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.
    
 0.599
pex5l
TPR_REGION domain-containing protein.
    
 0.597
app
BPTI/Kunitz inhibitor domain-containing protein.
   
 0.587
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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