LOC103173521 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103173521

ABC transporter domain-containing protein. (205 aa)

Predicted Functional Partners:

ENSCMIP00000004276

0.900

ENSCMIP00000020587

0.699

LOC103172751

0.652

ENSCMIP00000009361

0.652

prkacb

0.463

prkaca

0.463

rxra

0.458

LOC103184778

0.458

ENSCMIP00000020047

0.442

zdhhc8

0.442

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004276	ENSCMIP00000009361	ENSCMIP00000004276	ENSCMIP00000009361	Uncharacterized protein.	NR LBD domain-containing protein.	0.652
ENSCMIP00000004276	ENSCMIP00000020047	ENSCMIP00000004276	ENSCMIP00000020047	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.442
ENSCMIP00000004276	ENSCMIP00000020587	ENSCMIP00000004276	ENSCMIP00000020587	Uncharacterized protein.	Uncharacterized protein.	0.934
ENSCMIP00000004276	LOC103172751	ENSCMIP00000004276	ENSCMIP00000002494	Uncharacterized protein.	Uncharacterized protein.	0.652
ENSCMIP00000004276	LOC103173521	ENSCMIP00000004276	ENSCMIP00000001476	Uncharacterized protein.	ABC transporter domain-containing protein.	0.900
ENSCMIP00000004276	LOC103184778	ENSCMIP00000004276	ENSCMIP00000008330	Uncharacterized protein.	Uncharacterized protein.	0.458
ENSCMIP00000004276	prkaca	ENSCMIP00000004276	ENSCMIP00000047063	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.463
ENSCMIP00000004276	prkacb	ENSCMIP00000004276	ENSCMIP00000018848	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.463
ENSCMIP00000004276	rxra	ENSCMIP00000004276	ENSCMIP00000001921	Uncharacterized protein.	Uncharacterized protein.	0.458
ENSCMIP00000004276	zdhhc8	ENSCMIP00000004276	ENSCMIP00000031341	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.442
ENSCMIP00000009361	ENSCMIP00000004276	ENSCMIP00000009361	ENSCMIP00000004276	NR LBD domain-containing protein.	Uncharacterized protein.	0.652
ENSCMIP00000009361	ENSCMIP00000020587	ENSCMIP00000009361	ENSCMIP00000020587	NR LBD domain-containing protein.	Uncharacterized protein.	0.652
ENSCMIP00000009361	LOC103173521	ENSCMIP00000009361	ENSCMIP00000001476	NR LBD domain-containing protein.	ABC transporter domain-containing protein.	0.652
ENSCMIP00000009361	LOC103184778	ENSCMIP00000009361	ENSCMIP00000008330	NR LBD domain-containing protein.	Uncharacterized protein.	0.923
ENSCMIP00000009361	rxra	ENSCMIP00000009361	ENSCMIP00000001921	NR LBD domain-containing protein.	Uncharacterized protein.	0.923
ENSCMIP00000020047	ENSCMIP00000004276	ENSCMIP00000020047	ENSCMIP00000004276	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.442
ENSCMIP00000020047	ENSCMIP00000020587	ENSCMIP00000020047	ENSCMIP00000020587	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.442
ENSCMIP00000020047	LOC103173521	ENSCMIP00000020047	ENSCMIP00000001476	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ABC transporter domain-containing protein.	0.442
ENSCMIP00000020587	ENSCMIP00000004276	ENSCMIP00000020587	ENSCMIP00000004276	Uncharacterized protein.	Uncharacterized protein.	0.934
ENSCMIP00000020587	ENSCMIP00000009361	ENSCMIP00000020587	ENSCMIP00000009361	Uncharacterized protein.	NR LBD domain-containing protein.	0.652