STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
surf4Uncharacterized protein. (315 aa)    
Predicted Functional Partners:
gosr1
Uncharacterized protein.
    
 
 0.857
tmed2
GOLD domain-containing protein.
   
 0.826
kdelr2
ER lumen protein-retaining receptor.
   
 0.783
Surf1
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
 
    
 0.744
atic
MGS domain-containing protein.
    
  0.740
tmed10
GOLD domain-containing protein; Belongs to the EMP24/GP25L family.
   
 0.734
LOC103174330
GOLD domain-containing protein.
   
 0.715
ENSCMIP00000000308
COPI_C domain-containing protein.
   
 
 0.693
stx18
Syntaxin-18_N domain-containing protein.
     
 0.673
copb2
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
  0.666
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.