ENSCMIP00000001490 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001490

Uncharacterized protein. (60 aa)

Predicted Functional Partners:

ENSCMIP00000035798

0.880

abce1

0.852

mms19

0.642

mettl25

0.624

fgf19

0.615

vps11

0.523

fgf3

0.482

chrac1

0.464

usp19

0.453

hltf

0.426

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001490	ENSCMIP00000035798	ENSCMIP00000001490	ENSCMIP00000035798	Uncharacterized protein.	Yae1_N domain-containing protein.	0.880
ENSCMIP00000001490	abce1	ENSCMIP00000001490	ENSCMIP00000019487	Uncharacterized protein.	Uncharacterized protein.	0.852
ENSCMIP00000001490	chrac1	ENSCMIP00000001490	ENSCMIP00000037615	Uncharacterized protein.	Uncharacterized protein.	0.464
ENSCMIP00000001490	fgf19	ENSCMIP00000001490	ENSCMIP00000041094	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.615
ENSCMIP00000001490	fgf3	ENSCMIP00000001490	ENSCMIP00000041162	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.482
ENSCMIP00000001490	hltf	ENSCMIP00000001490	ENSCMIP00000024002	Uncharacterized protein.	Uncharacterized protein.	0.426
ENSCMIP00000001490	mettl25	ENSCMIP00000001490	ENSCMIP00000002675	Uncharacterized protein.	Uncharacterized protein.	0.624
ENSCMIP00000001490	mms19	ENSCMIP00000001490	ENSCMIP00000024921	Uncharacterized protein.	Uncharacterized protein.	0.642
ENSCMIP00000001490	usp19	ENSCMIP00000001490	ENSCMIP00000048805	Uncharacterized protein.	Uncharacterized protein.	0.453
ENSCMIP00000001490	vps11	ENSCMIP00000001490	ENSCMIP00000036333	Uncharacterized protein.	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.	0.523
ENSCMIP00000035798	ENSCMIP00000001490	ENSCMIP00000035798	ENSCMIP00000001490	Yae1_N domain-containing protein.	Uncharacterized protein.	0.880
ENSCMIP00000035798	abce1	ENSCMIP00000035798	ENSCMIP00000019487	Yae1_N domain-containing protein.	Uncharacterized protein.	0.930
ENSCMIP00000035798	mms19	ENSCMIP00000035798	ENSCMIP00000024921	Yae1_N domain-containing protein.	Uncharacterized protein.	0.764
abce1	ENSCMIP00000001490	ENSCMIP00000019487	ENSCMIP00000001490	Uncharacterized protein.	Uncharacterized protein.	0.852
abce1	ENSCMIP00000035798	ENSCMIP00000019487	ENSCMIP00000035798	Uncharacterized protein.	Yae1_N domain-containing protein.	0.930
abce1	mms19	ENSCMIP00000019487	ENSCMIP00000024921	Uncharacterized protein.	Uncharacterized protein.	0.831
chrac1	ENSCMIP00000001490	ENSCMIP00000037615	ENSCMIP00000001490	Uncharacterized protein.	Uncharacterized protein.	0.464
chrac1	hltf	ENSCMIP00000037615	ENSCMIP00000024002	Uncharacterized protein.	Uncharacterized protein.	0.633
chrac1	mettl25	ENSCMIP00000037615	ENSCMIP00000002675	Uncharacterized protein.	Uncharacterized protein.	0.586
fgf19	ENSCMIP00000001490	ENSCMIP00000041094	ENSCMIP00000001490	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.615