ENSCMIP00000001494 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSCMIP00000001494

Uncharacterized protein. (154 aa)

Predicted Functional Partners:

ENSCMIP00000001489

0.900

LOC103173608

0.900

LOC103185701

0.689

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001489	ENSCMIP00000001494	ENSCMIP00000001489	ENSCMIP00000001494	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000001489	LOC103173608	ENSCMIP00000001489	ENSCMIP00000003237	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSCMIP00000001494	ENSCMIP00000001489	ENSCMIP00000001494	ENSCMIP00000001489	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000001494	LOC103173608	ENSCMIP00000001494	ENSCMIP00000003237	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000001494	LOC103185701	ENSCMIP00000001494	ENSCMIP00000036535	Uncharacterized protein.	Uncharacterized protein.	0.689
LOC103173608	ENSCMIP00000001489	ENSCMIP00000003237	ENSCMIP00000001489	Uncharacterized protein.	Uncharacterized protein.	0.941
LOC103173608	ENSCMIP00000001494	ENSCMIP00000003237	ENSCMIP00000001494	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103185701	ENSCMIP00000001494	ENSCMIP00000036535	ENSCMIP00000001494	Uncharacterized protein.	Uncharacterized protein.	0.689