LOC103174190 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

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Co-expression

Experiments

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[Homology]

Score

LOC103174190

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

ncs1

0.788

aldh18a1

0.667

dctn2

0.570

wfs1

0.566

ENSCMIP00000013988

0.559

gnai1

0.559

LOC103182452

0.559

gnai2

0.559

LOC103175737

0.559

gpsm2

0.543

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000013988	LOC103174190	ENSCMIP00000013988	ENSCMIP00000001513	Uncharacterized protein.	Uncharacterized protein.	0.559
ENSCMIP00000013988	LOC103175737	ENSCMIP00000013988	ENSCMIP00000048333	Uncharacterized protein.	Uncharacterized protein.	0.564
ENSCMIP00000013988	LOC103182452	ENSCMIP00000013988	ENSCMIP00000038006	Uncharacterized protein.	Uncharacterized protein.	0.547
ENSCMIP00000013988	gnai1	ENSCMIP00000013988	ENSCMIP00000035446	Uncharacterized protein.	Uncharacterized protein.	0.546
ENSCMIP00000013988	gnai2	ENSCMIP00000013988	ENSCMIP00000042819	Uncharacterized protein.	Uncharacterized protein.	0.547
ENSCMIP00000013988	gpsm2	ENSCMIP00000013988	ENSCMIP00000022617	Uncharacterized protein.	Uncharacterized protein.	0.826
LOC103174190	ENSCMIP00000013988	ENSCMIP00000001513	ENSCMIP00000013988	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103174190	LOC103175737	ENSCMIP00000001513	ENSCMIP00000048333	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103174190	LOC103182452	ENSCMIP00000001513	ENSCMIP00000038006	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103174190	aldh18a1	ENSCMIP00000001513	ENSCMIP00000029682	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.667
LOC103174190	dctn2	ENSCMIP00000001513	ENSCMIP00000046359	Uncharacterized protein.	Uncharacterized protein.	0.570
LOC103174190	gnai1	ENSCMIP00000001513	ENSCMIP00000035446	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103174190	gnai2	ENSCMIP00000001513	ENSCMIP00000042819	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103174190	gpsm2	ENSCMIP00000001513	ENSCMIP00000022617	Uncharacterized protein.	Uncharacterized protein.	0.543
LOC103174190	ncs1	ENSCMIP00000001513	ENSCMIP00000033834	Uncharacterized protein.	Uncharacterized protein.	0.788
LOC103174190	wfs1	ENSCMIP00000001513	ENSCMIP00000002534	Uncharacterized protein.	Uncharacterized protein.	0.566
LOC103175737	ENSCMIP00000013988	ENSCMIP00000048333	ENSCMIP00000013988	Uncharacterized protein.	Uncharacterized protein.	0.564
LOC103175737	LOC103174190	ENSCMIP00000048333	ENSCMIP00000001513	Uncharacterized protein.	Uncharacterized protein.	0.559
LOC103175737	LOC103182452	ENSCMIP00000048333	ENSCMIP00000038006	Uncharacterized protein.	Uncharacterized protein.	0.564
LOC103175737	gnai1	ENSCMIP00000048333	ENSCMIP00000035446	Uncharacterized protein.	Uncharacterized protein.	0.564