Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnni1Troponin I, slow skeletal muscle-like protein. (189 aa)    
Predicted Functional Partners:
tnnc2
Uncharacterized protein.
   
 0.963
ENSCMIP00000028177
Uncharacterized protein.
 
 0.954
tnnt1
Troponin T, slow skeletal muscle-like protein.
  
 0.954
LOC103174878
Troponin T type 3 (Skeletal, fast).
  
 0.953
tnnt2
Uncharacterized protein.
 
 0.950
tnnc1
Uncharacterized protein.
   
 0.948
LOC103179832
Uncharacterized protein.
   
 0.948
LOC103185560
Uncharacterized protein.
  
  
 
0.903
LOC103185561
Uncharacterized protein.
  
  
 
0.901
LOC103174090
EF-hand domain-containing protein.
   
 0.884
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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