ENSCMIP00000001553 protein (Callorhinchus milii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCMIP00000001553

Uncharacterized protein. (267 aa)

Predicted Functional Partners:

LOC103179733

0.978

LOC103190064

0.977

ENSCMIP00000000538

0.950

dsp

0.949

pkp2

0.903

LOC103179651

0.851

Dsg4

0.796

LOC103173381

0.711

ctnnb1

0.628

pkp3

0.562

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dsg4	ENSCMIP00000000538	ENSCMIP00000000545	ENSCMIP00000000538	Uncharacterized protein.	Uncharacterized protein.	0.926
Dsg4	ENSCMIP00000001553	ENSCMIP00000000545	ENSCMIP00000001553	Uncharacterized protein.	Uncharacterized protein.	0.796
Dsg4	LOC103173381	ENSCMIP00000000545	ENSCMIP00000010091	Uncharacterized protein.	Uncharacterized protein.	0.638
Dsg4	LOC103179651	ENSCMIP00000000545	ENSCMIP00000000506	Uncharacterized protein.	Uncharacterized protein.	0.821
Dsg4	LOC103190064	ENSCMIP00000000545	ENSCMIP00000041715	Uncharacterized protein.	Uncharacterized protein.	0.929
Dsg4	ctnnb1	ENSCMIP00000000545	ENSCMIP00000023661	Uncharacterized protein.	Uncharacterized protein.	0.720
Dsg4	dsp	ENSCMIP00000000545	ENSCMIP00000034216	Uncharacterized protein.	SH3 domain-containing protein.	0.524
Dsg4	pkp2	ENSCMIP00000000545	ENSCMIP00000029669	Uncharacterized protein.	Uncharacterized protein.	0.796
Dsg4	pkp3	ENSCMIP00000000545	ENSCMIP00000018085	Uncharacterized protein.	Uncharacterized protein.	0.766
ENSCMIP00000000538	Dsg4	ENSCMIP00000000538	ENSCMIP00000000545	Uncharacterized protein.	Uncharacterized protein.	0.926
ENSCMIP00000000538	ENSCMIP00000001553	ENSCMIP00000000538	ENSCMIP00000001553	Uncharacterized protein.	Uncharacterized protein.	0.950
ENSCMIP00000000538	LOC103173381	ENSCMIP00000000538	ENSCMIP00000010091	Uncharacterized protein.	Uncharacterized protein.	0.648
ENSCMIP00000000538	LOC103179651	ENSCMIP00000000538	ENSCMIP00000000506	Uncharacterized protein.	Uncharacterized protein.	0.553
ENSCMIP00000000538	LOC103179733	ENSCMIP00000000538	ENSCMIP00000000584	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.956
ENSCMIP00000000538	LOC103190064	ENSCMIP00000000538	ENSCMIP00000041715	Uncharacterized protein.	Uncharacterized protein.	0.965
ENSCMIP00000000538	ctnnb1	ENSCMIP00000000538	ENSCMIP00000023661	Uncharacterized protein.	Uncharacterized protein.	0.497
ENSCMIP00000000538	dsp	ENSCMIP00000000538	ENSCMIP00000034216	Uncharacterized protein.	SH3 domain-containing protein.	0.935
ENSCMIP00000000538	pkp2	ENSCMIP00000000538	ENSCMIP00000029669	Uncharacterized protein.	Uncharacterized protein.	0.950
ENSCMIP00000000538	pkp3	ENSCMIP00000000538	ENSCMIP00000018085	Uncharacterized protein.	Uncharacterized protein.	0.632
ENSCMIP00000001553	Dsg4	ENSCMIP00000001553	ENSCMIP00000000545	Uncharacterized protein.	Uncharacterized protein.	0.796