STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
e2f1E2F_TDP domain-containing protein. (308 aa)    
Predicted Functional Partners:
rb1
Uncharacterized protein.
   
 0.996
topbp1
Uncharacterized protein.
    
 
 0.978
mdm2
RING-type domain-containing protein; Belongs to the MDM2/MDM4 family.
    
 
 0.970
sp1
Uncharacterized protein.
    
 0.956
ep300
Uncharacterized protein.
    
 0.952
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 
 0.942
setd7
SET domain-containing protein.
    
 0.936
tfdp1
Transcription factor.
  
 0.934
tfdp2
Uncharacterized protein.
  
 0.932
phb
Prohibitin.
    
 
 0.923
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.