LOC103174203 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC103174203

Uncharacterized protein. (98 aa)

Predicted Functional Partners:

cep19

0.960

fgfr1op

0.807

exoc2

0.798

ENSCMIP00000000884

0.789

rab3il1

0.751

rab3ip

0.751

exoc7

0.690

chm

0.679

ift22

0.671

ccdc34

0.661

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000000884	LOC103174203	ENSCMIP00000000884	ENSCMIP00000001574	Uncharacterized protein.	Uncharacterized protein.	0.789
ENSCMIP00000000884	cep19	ENSCMIP00000000884	ENSCMIP00000032913	Uncharacterized protein.	Uncharacterized protein.	0.901
ENSCMIP00000000884	fgfr1op	ENSCMIP00000000884	ENSCMIP00000007659	Uncharacterized protein.	Uncharacterized protein.	0.979
LOC103174203	ENSCMIP00000000884	ENSCMIP00000001574	ENSCMIP00000000884	Uncharacterized protein.	Uncharacterized protein.	0.789
LOC103174203	ccdc34	ENSCMIP00000001574	ENSCMIP00000039253	Uncharacterized protein.	Uncharacterized protein.	0.661
LOC103174203	cep19	ENSCMIP00000001574	ENSCMIP00000032913	Uncharacterized protein.	Uncharacterized protein.	0.960
LOC103174203	chm	ENSCMIP00000001574	ENSCMIP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.679
LOC103174203	exoc2	ENSCMIP00000001574	ENSCMIP00000047854	Uncharacterized protein.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.798
LOC103174203	exoc7	ENSCMIP00000001574	ENSCMIP00000040189	Uncharacterized protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.690
LOC103174203	fgfr1op	ENSCMIP00000001574	ENSCMIP00000007659	Uncharacterized protein.	Uncharacterized protein.	0.807
LOC103174203	ift22	ENSCMIP00000001574	ENSCMIP00000027826	Uncharacterized protein.	Rab-like protein 5.	0.671
LOC103174203	rab3il1	ENSCMIP00000001574	ENSCMIP00000026661	Uncharacterized protein.	Sec2p domain-containing protein.	0.751
LOC103174203	rab3ip	ENSCMIP00000001574	ENSCMIP00000047737	Uncharacterized protein.	Rab-3A-interacting protein-like protein.	0.751
ccdc34	LOC103174203	ENSCMIP00000039253	ENSCMIP00000001574	Uncharacterized protein.	Uncharacterized protein.	0.661
cep19	ENSCMIP00000000884	ENSCMIP00000032913	ENSCMIP00000000884	Uncharacterized protein.	Uncharacterized protein.	0.901
cep19	LOC103174203	ENSCMIP00000032913	ENSCMIP00000001574	Uncharacterized protein.	Uncharacterized protein.	0.960
cep19	fgfr1op	ENSCMIP00000032913	ENSCMIP00000007659	Uncharacterized protein.	Uncharacterized protein.	0.973
chm	LOC103174203	ENSCMIP00000011599	ENSCMIP00000001574	Uncharacterized protein.	Uncharacterized protein.	0.679
chm	rab3il1	ENSCMIP00000011599	ENSCMIP00000026661	Uncharacterized protein.	Sec2p domain-containing protein.	0.482
chm	rab3ip	ENSCMIP00000011599	ENSCMIP00000047737	Uncharacterized protein.	Rab-3A-interacting protein-like protein.	0.482