STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps4aUncharacterized protein; Belongs to the AAA ATPase family. (475 aa)    
Predicted Functional Partners:
chmp5
Charged multivesicular body protein 5-like protein.
   
 0.986
chmp1b
Uncharacterized protein.
   
 0.982
chmp1a
Uncharacterized protein.
   
 0.982
ENSCMIP00000015460
Uncharacterized protein.
   
 0.972
chmp2a
Charged multivesicular body protein 2a.
    
 0.970
chmp6
Uncharacterized protein.
    
 0.970
ist1
IST1-like protein.
   
 0.963
LOC103181485
Charged multivesicular body protein 3-like protein.
   
 0.905
vps4b
Uncharacterized protein; Belongs to the AAA ATPase family.
  
  
 
0.901
chmp4c
Uncharacterized protein.
    
 0.895
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.