STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srsf11RRM domain-containing protein. (108 aa)    
Predicted Functional Partners:
V9KZD8_CALMI
Serine/arginine-rich splicing factor 11-like protein.
 
      0.900
srsf2
Splicing factor, arginine/serine-rich 2.
   
 0.769
LOC103172223
Serine/arginine-rich splicing factor 3.
   
 0.761
srrm1
PWI domain-containing protein.
   
 0.722
rnps1
RRM domain-containing protein.
   
 0.719
srsf1
Serine/arginine-rich splicing factor 1B.
   
 0.695
Srsf9
Uncharacterized protein.
   
 0.670
pnisr
Uncharacterized protein.
   
 
 0.670
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.661
cdc40
WD_REPEATS_REGION domain-containing protein.
     
 0.636
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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